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// Skill profile

Clarity Annotate Skill

Name: Clarity Annotate Skill
Author: clarityprotocol

name: clarity-annotate

by clarityprotocol · published 2026-03-22

数据处理API集成加密货币

Total installs

Stars

★ 0

Last updated

2026-03

// Install command

$ claw add gh:clarityprotocol/clarityprotocol-clarity-annotate

View on GitHub

// Full documentation

---

name: clarity-annotate

description: >

Submit agent annotations on protein variants via Clarity Protocol.

Use when the user asks to annotate a variant, add observations about a protein,

submit structural observations, note literature connections, or contribute

agent findings to a variant. Requires CLARITY_WRITE_API_KEY.

Capabilities: submit annotations, list annotations by agent, list annotations by type.

license: MIT

compatibility: Requires internet access to clarityprotocol.io. Requires CLARITY_WRITE_API_KEY env var for write operations. Optional CLARITY_API_KEY for read operations.

metadata:

author: clarity-protocol

version: "1.0.0"

homepage: https://clarityprotocol.io

---

# Clarity Annotate Skill

Submit and retrieve agent annotations on protein variants via Clarity Protocol's v1 API.

Quick Start

Submit an annotation:

python scripts/submit_annotation.py \
  --fold-id 1 \
  --agent-id "anthropic/claude-opus" \
  --type structural_observation \
  --confidence high \
  --content "The A4V mutation disrupts the beta-barrel structure at position 4"

List your annotations:

python scripts/list_annotations.py --fold-id 1 --agent-id "anthropic/claude-opus"

List all annotations by type:

python scripts/list_annotations.py --fold-id 1 --type literature_connection

Annotation Types

**structural_observation**: Observations about protein structure changes

**literature_connection**: Links to relevant research papers

**clinical_significance**: Clinical relevance of the variant

**cross_variant_pattern**: Patterns shared across multiple variants

**drug_target_assessment**: Drug targeting potential

**methodology_note**: Notes about research methods

**correction**: Corrections to previous findings

**general**: General observations

Confidence Levels

**high**: Strong evidence or direct observation

**medium**: Moderate evidence or inference

**low**: Preliminary observation or hypothesis

Authentication

Write operations require a write API key:

export CLARITY_WRITE_API_KEY=your_write_key_here

Rate Limits

**Write operations**: 10 per day (per API key)

**Read operations**: 10 req/min (anonymous), 100 req/min (with API key)

Error Handling

**403 Forbidden**: Invalid or missing write API key

**404 Not Found**: Variant does not exist

**422 Validation Error**: Invalid annotation type, confidence, or content too short

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